PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003473-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 545aa    MW: 61656.6 Da    PI: 8.5309
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003473-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.92.9e-1757151190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                            kfY++YAk +GF  rks+++ s ++g+i  + + C++eg + + ++         k++r+r++ ++gC+ak+  + ++ g+++v  ++
  SMil_00003473-RA_Salv  57 KFYRKYAKACGFVSRKSTKSVS-NDGTIRIQYMLCNREGAAPNADELlladdyFPKKKRKRSSCKVGCEAKIIFQIMSYGRYYVRIFV 143
                            6*************99998887.88889999999******99998889999998899999**************************** PP

                   FAR1  83 leHnHela 90 
                            + HnH+++
  SMil_00003473-RA_Salv 144 EGHNHKMV 151
                            *****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-1557151IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.163348384IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MASLSSNMSE SMSASEVIEE SATDVLGESA NVWFPECDDS KKPFVGQIFN DLVKAVKFYR  60
KYAKACGFVS RKSTKSVSND GTIRIQYMLC NREGAAPNAD ELLLADDYFP KKKRKRSSCK  120
VGCEAKIIFQ IMSYGRYYVR IFVEGHNHKM VSAGTRHLLP SNRNIEPIHQ YFIHAGIKAN  180
FGPMRTFRMY VELVGGFDKA GCTSIDFKNY VRDLNVHIVD SDAHMLLDTL KNKKEDCEGF  240
QYFYDVDDEN QLSRLIWTDQ QSVNNYKNFG EAVSFDATYC TNRIDLADEI GVPPMCTIHA  300
IEKHASTLYT NSIFKEVQAE MKVAALSCIM SKMEGNKYVV DDNIDGLFTV THDTVTDYFR  360
CTCNLFTRKG YLCSHIFYVL RTLKVVEIPE KYIANRWCKS YMLSTFQATD KMTCPTRNLP  420
IGNDALFKVF SNCIGHVNGD EELRKQLLAD FIDVENKFKK LGKQNPMANS KAAMFNEFYG  480
ATPPDVPTVL PPAISKTKGS GAGGRRKSNM EKAITLSQKP LRNCKRCNTM AHHDSRNCPT  540
KAQPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116KKRKRS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1683922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-29FAR1-related sequence 5